Skip to content
Poised Books
Request

Bookkeeping cleanup for medical & dental practices

Medical and dental practices have revenue flows nothing like a typical small business: insurance reimbursements net of contractual adjustments, patient copays through a card processor, and an S-corp owner who has to be on payroll. We set the books up right, or clean up the ones that weren’t.

Billed hourly against a written estimate, agreed before any work starts. Most cleanups are done in 2–6 weeks.

Why medical & dental practices books get messy.

Medical and dental practice books get complicated because the revenue almost never arrives the way it was billed. Insurance reimbursements land net of contractual adjustments, so the deposit rarely matches the charge, and EHR billing reports have to be tied back to actual bank activity for any of it to make sense. Patient copays flow through a card processor with its own fees. Most practices are structured as S-corps, which means the owner has to run a reasonable salary through payroll rather than just taking draws, a detail that’s easy to miss and expensive to fix later. Add financed equipment, clinical payroll, and the recordkeeping discipline a healthcare practice needs, and it’s clear why so many providers spend their first year untangling books that were set up generic from the start.

What trips up medical & dental practices.

  • Insurance reimbursements that never match the charge

    Payers reimburse net of contractual adjustments, so deposits rarely equal what was billed. Without tying EHR reports to the bank, your revenue and your write-offs are both unclear.
  • S-corp owner taking draws instead of a salary

    Most practices elect S-corp status, which requires the owner on payroll at a reasonable salary. Draws instead of W-2 wages create a tax problem that compounds every year it’s missed.
  • Patient payments and copays lost in processor fees

    Copays and patient balances run through a card processor that nets out its fees. Booked as a single deposit, your patient revenue and merchant costs both vanish.
  • Clinical payroll set up wrong from day one

    Staff, providers, benefit deductions, and state registrations. Get the payroll foundation wrong and you spend the first year fixing it instead of seeing patients.
  • Financed equipment booked as a plain expense

    Imaging, chairs, and lab equipment bought on financing need to be capitalized with the loan recorded as a liability, not expensed, or the balance sheet misleads you and your lender.

What we handle for medical & dental practices.

Every cleanup is led by Elizabeth Olsen, a West Point graduate and QuickBooks Advanced Certified ProAdvisor, and built around how your industry actually earns and spends.

  • Reconcile insurance reimbursements net of contractual adjustments and tie EHR billing reports back to bank deposits
  • Separate patient copays and balances from insurance revenue and account for merchant processor fees correctly
  • Set up or correct S-corp owner payroll alongside clinical staff, including state registrations and benefit deductions
  • Capitalize financed equipment and record the related loans as liabilities with a clean amortization schedule
  • Build a chart of accounts that makes year-end S-corp tax planning straightforward for your CPA
  • Maintain the recordkeeping discipline a healthcare practice expects, with documented, reviewable monthly workflows

Medical & dental practices bookkeeping questions.

Yes. This is the defining challenge of medical practice bookkeeping. Payers reimburse net of contractual adjustments, so deposits don’t match charges. We tie your EHR billing reports back to bank deposits, separate the contractual write-offs, and split patient payments from insurance revenue so your real numbers are visible.

Almost certainly, yes. An S-corp owner-provider is generally required to take a reasonable salary through payroll rather than only taking distributions. We set up or correct your owner payroll alongside your clinical staff and structure the books so your CPA can do S-corp tax planning cleanly at year-end.

That’s one of our favorite engagements. We configure QuickBooks with a medical-specific chart of accounts, set up payroll including the owner’s S-corp salary and all state registrations, connect bank feeds, and train your office manager, so you open with clean books and documented workflows instead of cleaning up a mess in year one.

Financed equipment should be capitalized as an asset with the financing recorded as a liability and depreciated over its useful life, not expensed in full. We record it correctly and build the amortization schedule, so your balance sheet reflects reality for both you and any lender reviewing your practice.

Cleaning up your medical & dental practices books starts with a free call.

Every engagement starts with a conversation and a clear scope and price in writing: billed hourly, no monthly bookkeeping retainer, no surprise invoices.

All industries